PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100112970091
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 82aa    MW: 9773.09 Da    PI: 9.9735
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100112970091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.9e-10347345
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                  +WT+   +++ da +++ ++   +W+ Iar++  g+++++++ ++ 
  Ote100112970091|100112970091  3 SWTPKQNKQFEDALARFDKDtpdRWHNIAREVT-GKSAEEVRQHYK 47
                                  6*******************************9.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.782154IPR017884SANT domain
SMARTSM007174.9E-6152IPR001005SANT/Myb domain
PfamPF002499.3E-8347IPR001005SANT/Myb domain
SuperFamilySSF466896.06E-13357IPR009057Homeodomain-like
CDDcd001677.31E-7349No hitNo description
Gene3DG3DSA:1.10.10.605.8E-6356IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MASWTPKQNK QFEDALARFD KDTPDRWHNI AREVTGKSAE EVRQHYKALE KDIMKIETDQ  60
VPIPNYRPLP NQQRLLKNLK QQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-244801191RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074553.16e-42protein RADIALIS-like 3
SwissprotQ1A1731e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2G9H6D08e-39A0A2G9H6D0_9LAMI; Uncharacterized protein
STRINGMigut.N00487.1.p2e-38(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231