PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100112970071
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 86aa    MW: 9927.1 Da    PI: 8.4763
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100112970071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.2e-09548344
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                  +WT+   +++ +a + + ++   +W+ Iar ++ g+++++++ ++
  Ote100112970071|100112970071  5 SWTAGQNKQFEEALAVHDKDtphRWHNIARAVN-GKSAEDVRRHY 48
                                  7********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.362156IPR017884SANT domain
SMARTSM007171.8E-7254IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-12460IPR009057Homeodomain-like
PfamPF002496.6E-7548IPR001005SANT/Myb domain
CDDcd001672.01E-6551No hitNo description
Gene3DG3DSA:1.10.10.601.4E-4557IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MASSSWTAGQ NKQFEEALAV HDKDTPHRWH NIARAVNGKS AEDVRRHYEA LEKDIIKIEN  60
DQVPIPNYTG YGNQYCRLMK NLKLQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-246851193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083673.13e-39protein RADIALIS-like 3
SwissprotQ1A1731e-28RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A022R1R62e-36A0A022R1R6_ERYGU; Uncharacterized protein
STRINGMigut.N00487.1.p4e-37(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231