PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100111630041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 254aa    MW: 29150.5 Da    PI: 9.677
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100111630041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000243960223
                                  EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                                  +C++C+k Fs+   L  H+++H
  Ote100111630041|100111630041 39 VCEICKKEFSSGKALGGHMSSH 60
                                  6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.5593869IPR007087Zinc finger, C2H2
SMARTSM003550.533860IPR015880Zinc finger, C2H2-like
PfamPF139129.9E-93960IPR007087Zinc finger, C2H2
SuperFamilySSF576673.25E-739108No hitNo description
PROSITE patternPS0002804062IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-484108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.74386108IPR007087Zinc finger, C2H2
SMARTSM003550.05686108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
PfamPF139121.2E-588110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEPNQDEEFR WLSIKKEEHE SEVLEFRMMK EDSRNTKRVC EICKKEFSSG KALGGHMSSH  60
VHAHNMKKQT QTTQSEASDF VEKKKYFCAI CSKEFLTMKA LSGHMRCHPE RTWKGINPPP  120
HITPFSPSSS SSSTPDXXXX XXXXXXXXLT KLLTRWPVTA KRGRKAIPNE VDRAVHFLMI  180
LARGEGGKKE INAMESESED EKLIVMMKNK KKRKKMKLSE LNFMDGEGGA HRKGVGFNTE  240
KLQLDIDLNE PASW
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263