PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100107590051
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 305aa    MW: 34788.5 Da    PI: 7.4643
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100107590051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.2e-0784105223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                    C+ Cgk F+r  nL+ H+r H
  Ote100107590051|100107590051  84 FCEVCGKGFKRDANLRMHMRAH 105
                                   6*******************99 PP

2zf-C2H210.90.0014174197123
                                   EEETTTT.EEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                                   y+C+ C+ ksFs   +Lk+H++ +
  Ote100107590051|100107590051 174 YSCNRCNkKSFSVVADLKSHLKHC 197
                                   99*******************977 PP

3zf-C2H214.50.0001206221621
                                   TTEEESSHHHHHHHHH CS
                       zf-C2H2   6 CgksFsrksnLkrHir 21 
                                   Cg+sFsrk+ L +H+ 
  Ote100107590051|100107590051 206 CGTSFSRKDKLFSHMA 221
                                   ***************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-680106No hitNo description
PROSITE profilePS5015711.98883110IPR007087Zinc finger, C2H2
SMARTSM003550.001883105IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.4E-683105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM00355110136169IPR015880Zinc finger, C2H2-like
SMARTSM0035513174196IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.7E-4196221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355150202226IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDDLQKFLSD SVKSESLIGQ PQMDMVSSEI ASAIHQIIEE KQNRDPNPVK LPNPXXXXXX  60
XXXXXDYEII EMDAVELLAE HVHFCEVCGK GFKRDANLRM HMRAHGNQFK TPEALAKPEK  120
IGDSIXXXXX XXXXXXSCPY VGCNRNKQHK KFKPLKSAIC VKNHFKRSHC PKMYSCNRCN  180
KKSFSVVADL KSHLKHCGES RWRCSCGTSF SRKDKLFSHM ALFEGHMPXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXNANDV MGCEIDDMFL DGFGSLENYS FLDVLYSPNS VNTSSPCGIE  300
GFFDL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097563.11e-131protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ9C8N51e-71STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A068TYT61e-119A0A068TYT6_COFCA; Uncharacterized protein
STRINGMigut.L00137.1.p1e-114(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126
Publications ? help Back to Top
  1. Kobayashi Y, et al.
    Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
    Plant Physiol., 2013. 163(1): p. 180-92
    [PMID:23839867]
  2. Yokosho K,Yamaji N,Ma JF
    Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
    Plant Cell Physiol., 2014. 55(12): p. 2077-91
    [PMID:25273892]
  3. Geng X, et al.
    LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
    Plant J., 2017. 90(3): p. 491-504
    [PMID:28181322]
  4. Balzergue C, et al.
    Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
    Nat Commun, 2017. 8: p. 15300
    [PMID:28504266]
  5. Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
    Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
    Front Plant Sci, 2017. 8: p. 822
    [PMID:28567051]
  6. Jiang F, et al.
    Identification and characterization of suppressor mutants of stop1.
    BMC Plant Biol., 2017. 17(1): p. 128
    [PMID:28738784]
  7. Daspute AA, et al.
    Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
    Front Plant Sci, 2017. 8: p. 1358
    [PMID:28848571]
  8. Sharma A,Wai CM,Ming R,Yu Q
    Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
    Genome Biol Evol, 2017. 9(9): p. 2170-2190
    [PMID:28922793]
  9. Zhang Y, et al.
    The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 118
    [PMID:29491872]