PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100106580021
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 143aa    MW: 15704 Da    PI: 8.511
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100106580021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.91.2e-312103197
                        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 
                                   +C++C+vlrr+C+++C+l+p++     p++q++++ +v k+FG+s ++++++a+ e++r+++++sl++eA+ r+ +Pv+Ga
  Ote100106580021|100106580021   2 SCNGCRVLRRGCSEQCILRPCLewietPQAQANATLFVSKFFGRSDLMSFISAVAETKRPALFQSLLFEACGRTVNPVSGA 82 
                                   6******************************************************************************** PP

                        DUF260  77 vgvilklqqqleqlkaelall 97 
                                   vg++++++++++q+++e++l+
  Ote100106580021|100106580021  83 VGLLSTGNWHICQAAVETVLT 103
                                   ***************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.8441107IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-272101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MSCNGCRVLR RGCSEQCILR PCLEWIETPQ AQANATLFVS KFFGRSDLMS FISAVAETKR  60
PALFQSLLFE ACGRTVNPVS GAVGLLSTGN WHICQAAVET VLTGGVPRPV WIPPLGSDEG  120
LSXXXXXXXX XGIVWLLDRR IKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393744.12e-63PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN115e-59LBD37_ARATH; LOB domain-containing protein 37
TrEMBLE0CP372e-61E0CP37_VITVI; Putative uncharacterized protein
STRINGVIT_18s0001g09250.t015e-61(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490