PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100105480101
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 449aa    MW: 50607.4 Da    PI: 6.1996
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100105480101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-17123172155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Ote100105480101|100105480101 123 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 172
                                   78*******************......55************************998 PP

2AP228.53.9e-09215254144
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 
                                   s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+
  Ote100105480101|100105480101 215 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAAR 254
                                   89********.7******5553..2.26**********99**98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.84E-16123181IPR016177DNA-binding domain
PfamPF008472.0E-9123172IPR001471AP2/ERF domain
SMARTSM003805.1E-32124186IPR001471AP2/ERF domain
CDDcd000181.80E-11124182No hitNo description
Gene3DG3DSA:3.30.730.105.8E-17124180IPR001471AP2/ERF domain
PROSITE profilePS5103217.82124180IPR001471AP2/ERF domain
CDDcd000182.08E-22215284No hitNo description
PfamPF008474.6E-5215254IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-12215283IPR016177DNA-binding domain
SMARTSM003801.0E-25216288IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-10216282IPR001471AP2/ERF domain
PROSITE profilePS5103210.178216282IPR001471AP2/ERF domain
PRINTSPR003674.1E-6217228IPR001471AP2/ERF domain
PRINTSPR003674.1E-6264284IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MLDLNLAINP SVPTTDRAET ASSSSAIYVE TSSTAVDENS CSDHLIDFDI RKDNGEYEES  60
EKLSCDYVMK EFFSGDQSGR PMQWLDLSEN HHELMEHTII TKEHQQKRQL MKKSRRGPRS  120
RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGLDADINFN  180
VNDYDEDFMQ MKNLTKEEFV HILRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY  240
IYLGLFDSEI EAARSTLTDD ILWAYDKAAI KCNGKEAVTN FEPSTYEEEL NSEVAIGGWF  300
TCFLLSVIPP DGEKSNLNLS LSIAPPEGAP CEIHNMEICP ASASVAAQLS KTHGNVCEYP  360
FIWRGVNSCL SPLYEGTTIE KVVELDSSAN WSRNSRIDVH GDHSSPIFST AASSGFATSS  420
ATIHRLPFST RSPHHYLPPS NNESNYCLR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077383.11e-172floral homeotic protein APETALA 2
TrEMBLA0A2G9GII30.0A0A2G9GII3_9LAMI; Uncharacterized protein
STRINGXP_009606014.11e-138(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116