PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100100700021
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 171aa    MW: 19685.7 Da    PI: 10.1183
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100100700021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000453355123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C+ C+++F ++  L  H++ H
  Ote100100700021|100100700021 33 FSCNFCKRRFYNSQALGGHQNAH 55
                                  89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.85E-63060No hitNo description
Gene3DG3DSA:3.30.160.607.4E-43159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0323360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MQTEKPEWLS LSISKNAIKX XXXXXXXXXX KIFSCNFCKR RFYNSQALGG HQNAHKRERG  60
LVRHLQMPRS LGVQPHSHIH KPQKTRDSSI GTATPPTLEE HADFMWPGSF RVDDHHQQTE  120
RHSSRPEPDM LDLNLKLXXX XXXXXXXXXX XXXFISTGSA LAATLHVFNC L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088194.12e-34zinc finger protein 4-like
TrEMBLA0A2I4DQI82e-32A0A2I4DQI8_JUGRE; zinc finger protein 4-like
STRINGVIT_03s0091g00260.t013e-30(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32691313