PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100082790141
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 237aa    MW: 25950.8 Da    PI: 7.0527
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100082790141genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26035.72.5e-11456148
                        DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllka 48
                                  +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +      
  Ote100082790141|100082790141  4 SCNGCRVLRKGCSENCSIRPCLewiknPESQAHATVFLAKFYGRAGLXXXXXX 56
                                  6*******************************************998876665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031953.2E-7451IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCSENCS IRPCLEWIKN PESQAHATVF LAKFYGRAGL XXXXXXEPHQ  60
CRPPTLPPCL RADGEPYIRV GGADVVGQLA SLPEGCGGGA QGGNGQPDRK RXXXXXXXXX  120
XXXAKSGPPL KAFDIRHVIK EDKSAGSGDL HRAEAKRSPS HESSLSHQSE PVVESLGSAQ  180
TPEANINSES EERLEIDWID LNLSLGFQPV KRCVKSKPGE AASVEERLMI SFDDWDR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099556.13e-50PREDICTED: LOB domain-containing protein 41
TrEMBLA0A022R3673e-47A0A022R367_ERYGU; Uncharacterized protein