PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100082240051
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 134aa    MW: 15256.3 Da    PI: 10.2081
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100082240051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-0597119123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ykC++C+k +  +s+ k H + +
  Ote100082240051|100082240051  97 YKCEKCSKKYAVQSDWKAHSKIC 119
                                   9******************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.66E-684128No hitNo description
Gene3DG3DSA:3.30.160.601.1E-585118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEENVSNLTS ASGEASVSSN NNRNEISQQP VKKKRNQPGH PGHNLPWKLK QKSNKEVGRK  60
VYICPEIGCV HHDPSRALGD LTGIKKHFFR KHGEKKYKCE KCSKKYAVQS DWKAHSKICG  120
TREYRCDCGT LFSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-2293134344Zinc finger protein JACKDAW
5b3h_F5e-2293134344Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925456.14e-67protein indeterminate-domain 7
RefseqXP_020702200.16e-68protein indeterminate-domain 7
SwissprotQ8H1F55e-63IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2I0X3861e-66A0A2I0X386_9ASPA; Zinc finger protein MAGPIE
STRINGXP_008782520.12e-66(Phoenix dactylifera)
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]