PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100071740091
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 460aa    MW: 51934.4 Da    PI: 5.3833
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100071740091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.82.2e-30191122101
                                   HHHHHHHHHC...TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSE CS
                  HSF_DNA-bind   2 Flkklyeile...deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiw 79 
                                   Fl k+ye+         + ++sws + +sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+kv+ e+         w
  Ote100071740091|100071740091  19 FLLKTYEMXXxxxXXXXDGIVSWSGSRKSFVVWNPPEFARVLLPSYFKHNNFSSFIRQLNTYGFRKVDPER---------W 90 
                                   99******9955556899******999*****************************************999.........* PP

                                   EEEESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  80 eFkhksFkkgkkellekikrkk 101
                                   eF++++F k+kk+ll++i+r+k
  Ote100071740091|100071740091  91 EFANEEFVKDKKHLLKNIHRRK 112
                                   ********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.1E-4815111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-3216111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-2816111IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.9E-2719111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-106072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-107385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDGVASXXXX XXXXXPAPFL LKTYEMXXXX XXXXXDGIVS WSGSRKSFVV WNPPEFARVL  60
LPSYFKHNNF SSFIRQLNTY GFRKVDPERW EFANEEFVKD KKHLLKNIHR RKPIHSHSQP  120
QGSVDPERAA FEEEIDKLSR EKAALEGNLL GFKEQQSVAK VQLQDLTQRI GSMEQRQEKL  180
LSYLDKAVRN PEFVERLAQK LESMDFSAYN KKRRLPQAED VQLIQENVSV DNQSSCRPEF  240
DVSDQDFCNK LRLELSTAVS DGNLLSHSTQ SSNDDHMRTA GFVCPSETME LSDTGASLNL  300
KMDSSMSSPK LHSLHDSLTS NDEGDANLCL LNLSLACPLE LSKGQNTIGI PQSSAEICTS  360
SRPNIDNIDV SHQASSPADR TRPDETQMSS SPNVKKQGPV TEQKRVNDVF WEQFLTERPG  420
CSDTEEASSC YRANPYEEQE ERKSVKGVAG NTTGIEHLKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-163611143129Heat shock factor protein 1
5d5v_B7e-163611143129Heat shock factor protein 1
5d5v_D7e-163611143129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073785.10.0heat stress transcription factor A-5
SwissprotQ94BZ51e-133HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A4D8YKV40.0A0A4D8YKV4_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.N00424.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94612125
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]