PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100071490011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 308aa    MW: 35444.8 Da    PI: 9.6254
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100071490011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.67.1e-37311222102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d ++ ++isws+ g+sfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgFkk+++e+         weF+
  Ote100071490011|100071490011  31 FLTKTYDMVDDFTTAHIISWSRGGHSFVVWDPNSFSSTLLPRYFKHNNFSSFVRQLNTYGFKKIDSEK---------WEFA 102
                                   9***************************************************************9998.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   +++F +g+k+ll++ikr+k 
  Ote100071490011|100071490011 103 NEEFLRGQKHLLRNIKRRKA 122
                                   *****************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.66E-3527120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5727120IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-3928120IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.8E-3231120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-183154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDPGFFQVKE EGSSSPPRPM EGLHEAAPPP FLTKTYDMVD DFTTAHIISW SRGGHSFVVW  60
DPNSFSSTLL PRYFKHNNFS SFVRQLNTYG FKKIDSEKWE FANEEFLRGQ KHLLRNIKRR  120
KAPPLPPPQP PSPPHAAVEI GLFGQDEEAQ LLKRDKHVLM NELVKLRQQQ QNTRLYLQEM  180
ELRLRGTEKK QQQXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXDD DVSKKRLRLI  240
EAGETSRGDK GLNIIKTEFE EFCGPGGVSX XXXXXXXXXX XXXGSGNAAF GEGQDGGRRQ  300
RRLWERAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-242912027129Heat shock factor protein 1
5d5v_B9e-242912027129Heat shock factor protein 1
5d5v_D9e-242912027129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082584.29e-94heat stress transcription factor A-7a-like
SwissprotQ6VBB21e-76HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A4D9BR342e-95A0A4D9BR34_SALSN; Heat shock transcription factor, other eukaryote
STRINGPOPTR_0002s04900.11e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]