PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100070710161
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 487aa    MW: 54180.9 Da    PI: 5.1421
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100070710161genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.81.4e-36161082103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d++++ ++sws+n+nsfvv++  efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+
  Ote100070710161|100070710161  16 FLSKTYDMVDDPATDAVVSWSKNNNSFVVWNVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFA 87 
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   ++ F +g+k+ll++i+r+k +
  Ote100070710161|100070710161  88 NEGFLRGHKHLLKSINRRKAS 108
                                   ******************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-399100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-3511105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-6112105IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.9E-3216105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-201639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-205466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MEAGGISTAA TAPPPFLSKT YDMVDDPATD AVVSWSKNNN SFVVWNVPEF ARDLLPKYFK  60
HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGHKHLLK SINRRKASHA QQALQQNIQL  120
QNPVVPSCIE VGKFGIEEEV ERLKRDKNLL MQELVRLRQQ QQTTDSQLQT VGQRVHVMEQ  180
RQQQMVSFLA KAMQSPGFVS QLVHQQNDSP RQISGANKKR RLPNQDEESL AHKFSITSPD  240
GQIIKYQPLM NEAAKAMLRQ ILKMNTSNRA ESKLSNPNGL FIDKAHSPSD LLDSSSSSNR  300
TSGVTLSEVL PNTSALSEVQ SSSGLTHAKA CSTFFPEAST GLPDFIPAQG ISPEKSLDLP  360
DGPFKGIEPA EFSSGDIIPR VVEAAMPPAP SNEILEDYDV DILLDDIHKL AGMNDDIHKL  420
PGINDVFWEQ FLPESPPVED TDEINNVDLG HESKDQLIEL EGELDRLRNM NSLTEQMGLL  480
ASAAKSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-261410818123Heat shock factor protein 1
5d5u_B4e-26610516129Heat shock factor protein 1
5d5v_B4e-26610516129Heat shock factor protein 1
5d5v_D4e-26610516129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844238.10.0PREDICTED: heat stress transcription factor A-1
SwissprotQ84T611e-160HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A4D9A0V00.0A0A4D9A0V0_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.F00088.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]