PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100068630161
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bZIP
Protein Properties Length: 573aa    MW: 64219.7 Da    PI: 5.6722
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100068630161genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.12.8e-115994337
                                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHH CS
                        bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLee.kvke 37
                                   +k+ rr+++NReAAr+sR+RKka++++Le  k k 
  Ote100068630161|100068630161 59 TDKVMRRLAQNREAARKSRLRKKAYVQQLESsKLKL 94
                                  789**************************9624444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.8E-853100No hitNo description
SMARTSM003383.9E-457117IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.84159101IPR004827Basic-leucine zipper domain
PfamPF001702.7E-85995IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-76196No hitNo description
PROSITE patternPS0003606479IPR004827Basic-leucine zipper domain
PfamPF141441.2E-27147222IPR025422Transcription factor TGA like domain
SuperFamilySSF498991.44E-22363544IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF001396.8E-21443545IPR001220Legume lectin domain
Gene3DG3DSA:2.60.120.2002.8E-23445544IPR013320Concanavalin A-like lectin/glucanase domain
PROSITE patternPS003070447453IPR019825Legume lectin, beta chain, Mn/Ca-binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0030246Molecular Functioncarbohydrate binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MGIYEPIHQM SMWGDFKGLD ASSPIILEVD PKLDNQSEDT SHGTVGPSNK YDQETGKPTD  60
KVMRRLAQNR EAARKSRLRK KAYVQQLESS KLKLLQLEQE LGRARQQGLY SGSALDASPL  120
GYAGSTNPGI ATFEMEYGHW VEEQDRQISD LRNALNTETG ELELRIFVDG GMRHYFDLFT  180
MKATAAKADV FYLMSGMWKT SAERFFFWIG GFRPSELLKV LLPHLEPLSE QQRLDLGNLA  240
QSCQQAEDAL SQGMEKLQQF LGEAIAKQLG EGNYLPQIGA AIEKLEALVR FVGQADHLRQ  300
ETLQQISRIL TTRQAARGLL ALGEYFQRLR ALSSLWSSRP CDSSKLCRAE KIDRPDDISF  360
EILELIGDAT IGLGALQLTP ASSSRLPMHP VLNSGRVLXX XXXXXXXXXX XKLWEQGRGI  420
NGGASVVASF NTSFLFTLFR VEDSKLVAVE FDTFKDDELD DPDGNHVGIG FNSVRSIKTE  480
SLTHYNITIN STGTHFYNSW VDYDGLNRVI SVFIAEQAQM EGATPPKPRS PVLSAPLNLA  540
RHLQCLFRLL GFHRLWQCLE CCAEVEFDCP TLL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097616.10.0TGACG-sequence-specific DNA-binding protein TGA-1A isoform X3
SwissprotP142321e-170TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLA0A4D8ZE640.0A0A4D8ZE64_SALSN; Transcription factor TGA
STRINGMigut.L00088.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Publications ? help Back to Top
  1. Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J
    A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems.
    Plant Mol. Biol., 2000. 42(5): p. 679-88
    [PMID:10809441]
  2. Johnson C,Boden E,Desai M,Pascuzzi P,Arias J
    In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor.
    Plant J., 2001. 28(2): p. 237-43
    [PMID:11722767]
  3. Katagiri F,Seipel K,Chua NH
    Identification of a novel dimer stabilization region in a plant bZIP transcription activator.
    Mol. Cell. Biol., 1992. 12(11): p. 4809-16
    [PMID:1406663]
  4. Miao ZH,Lam E
    Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants.
    Plant J., 1995. 7(6): p. 887-96
    [PMID:7599649]
  5. Pascuzzi P,Hamilton D,Bodily K,Arias J
    Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor.
    J. Biol. Chem., 1998. 273(41): p. 26631-7
    [PMID:9756903]