PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100067690011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 174aa    MW: 19448.2 Da    PI: 4.6457
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100067690011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.31.3e-3871071100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrr+C+++C++ap+f  eq +++fa+vhk+FGasnv+kll++lp + r+da+ ++ yeA ar++dP+yG+v++i
  Ote100067690011|100067690011   7 SCGACKFLRRRCTEECIFAPHFSYEQaAAHFAAVHKVFGASNVSKLLSHLPVHSRSDAAITISYEALARMQDPIYGCVSHI 87 
                                   6***********************9978***************************************************** PP

                        DUF260  81 lklqqqleqlkaelallkee 100
                                   ++lqqq+++l++e+++++++
  Ote100067690011|100067690011  88 FALQQQVACLAEEIEMIEKQ 107
                                   **************999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.6496108IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MTGVSSSCGA CKFLRRRCTE ECIFAPHFSY EQAAAHFAAV HKVFGASNVS KLLSHLPVHS  60
RSDAAITISY EALARMQDPI YGCVSHIFAL QQQVACLAEE IEMIEKQMGN VGIVPLETSI  120
PYFSSDEAAG VPWWQYPEMN DEGYLNSSII DMLLQELTQD YYLHEQLMIC NPFG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858285.17e-78PREDICTED: LOB domain-containing protein 33
SwissprotQ9LHS82e-54LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A022PYK88e-78A0A022PYK8_ERYGU; Uncharacterized protein
STRINGPOPTR_0010s20800.17e-63(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127691521