PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100065310011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 489aa    MW: 54776 Da    PI: 4.4254
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100065310011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS130.12.5e-401364881373
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l++lL +  eav++g++ela+ +++ + + +sp g++++R+a  + +  +++                 +e++s++ +aa+
  Ote100065310011|100065310011 136 LIHLLRAYGEAVENGHKELAEVIVNSICDKSSPLGNTIERVAYNLFQSRESQGE-------------YLREESSKNLAAAF 203
                                   68999999**********************************977654333322.............233344789999** PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeele 159
                                   k+++++ P  +f+h+taN+aIl+++  +   +Hi+Dfd+++G+QWp+Ll+aL+++      +R+T + s e         e
  Ote100065310011|100065310011 204 KVLYQCIPNGRFAHFTANSAILDSIPDDvGVIHIVDFDMGEGVQWPPLLEALSTKG---KAVRLTSIRSDEGWnsCCWDFE 281
                                   *************************9998999**********************84...56********66447788999* PP

                          GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk... 237
                                    t++rL   A+++gv++e++    +++ed+  + L    +  ++ n+++ l ++  ++ +++s ++ +Lk  k+l ++   
  Ote100065310011|100065310011 282 GTRKRLLFHAKQCGVSLEIKE---TSIEDV-GDGL---GRGWVVFNCMVGLPHMG-RRRPMKS-INGFLKKAKGLIANygg 353
                                   ********************8...466666.4555...4779************8.6667777.79*********987666 PP

                          GRAS 238 vvvvveqe....adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313
                                   ++v+ + e    ++  n+  ++  f   l++y a+++sle ++p+   e+++v + l+   +++ va + ++ + ++++++
  Ote100065310011|100065310011 354 ILVHGDGEamedLNScNGYGYASYFDGLLRHYLAVLESLELNFPAYLAEARVVMESLFLAPLMSPVAWSRDWEETQKNQMK 434
                                   9999998854444445888*************************9985555555555777788888888888777788888 PP

                          GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaW 373
                                   +W       G ++++l++ ++++ +++++   s   r+e  +++++vl Wk+ pLv vS W
  Ote100065310011|100065310011 435 TW------LGGRKLSLGSLIEAK-EMVVEGETSYSLRIEgARENEMVLRWKETPLVRVSTW 488
                                   88......577788887776554.344444445667888888******************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098518.733110476IPR005202Transcription factor GRAS
PfamPF035148.7E-38136488IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MMQQAELFPT WPNFNFASSI LDQEIDLCMV DDHDRDFSYV ISSNTCVPDM ILDGFYDLKE  60
VQTGLDMEGL AAISRGDIEE ICGWINGDDI EADSSSHDIT MEGDDWSPTL SSESNHNCSM  120
FPQLDSPDIV NDHLMLIHLL RAYGEAVENG HKELAEVIVN SICDKSSPLG NTIERVAYNL  180
FQSRESQGEY LREESSKNLA AAFKVLYQCI PNGRFAHFTA NSAILDSIPD DVGVIHIVDF  240
DMGEGVQWPP LLEALSTKGK AVRLTSIRSD EGWNSCCWDF EGTRKRLLFH AKQCGVSLEI  300
KETSIEDVGD GLGRGWVVFN CMVGLPHMGR RRPMKSINGF LKKAKGLIAN YGGILVHGDG  360
EAMEDLNSCN GYGYASYFDG LLRHYLAVLE SLELNFPAYL AEARVVMESL FLAPLMSPVA  420
WSRDWEETQK NQMKTWLGGR KLSLGSLIEA KEMVVEGETS YSLRIEGARE NEMVLRWKET  480
PLVRVSTWM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095222.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A4D9ARC01e-174A0A4D9ARC0_SALSN; Uncharacterized protein
STRINGMigut.J00119.1.p1e-161(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938