PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100054180041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 172aa    MW: 19007.5 Da    PI: 9.893
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100054180041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000214567123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C++C++ F ++  L  H++ H
  Ote100054180041|100054180041 45 FECQHCHRKFANSQALGGHQNAH 67
                                  89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.9E-53571IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.6E-64172No hitNo description
PROSITE profilePS5015711.8634572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MGEHSSSTTD ACESDHQVMK IFGFPVENYK KASLHQQLDL DNKRFECQHC HRKFANSQAL  60
GGHQNAHKKE RQRAKRAHFV ADHRRLGAAM HMISPHGTRS GAPSTNSVYG PSSRLLAPPP  120
DHQTVVPHVL SGVPLRYPRG VQVALPRQAT VGPPKPVQLT DVNEGLDVDL HL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100835.12e-70zinc finger protein 6-like
TrEMBLA0A4D9A8531e-55A0A4D9A853_SALSN; Uncharacterized protein
STRINGMigut.O00779.1.p2e-44(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105631724