PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100049860041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 335aa    MW: 37528.4 Da    PI: 5.9402
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100049860041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.3e-34181102103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   F++k+y++++d+++++li+w + +nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+
  Ote100049860041|100049860041  18 FVMKTYQMVNDPATNRLITWGRANNSFIVMEPLDFSQRILPAYFKHHNFSSFVRQLNTYGFRKVDPDR---------WEFA 89 
                                   9********************999*****************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                    ++F +g+ +ll++i rkk++
  Ote100049860041|100049860041  90 SEWFLRGQSHLLCNIVRKKHT 110
                                   ******************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.2E-4914107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.02E-3115107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-3516107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-171841IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-175668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-176981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MRAMEVISSS SNNIIAPFVM KTYQMVNDPA TNRLITWGRA NNSFIVMEPL DFSQRILPAY  60
FKHHNFSSFV RQLNTYGFRK VDPDRWEFAS EWFLRGQSHL LCNIVRKKHT SRSNSSFHLK  120
HEDDEDEEQL MIEIAKLKQE QTSLEQELES MNRRLEATER RPQQMMTFLC KVVEDPEILP  180
RMMLEKEKMR RLTPTTDNDK KRKLIITTSS SNSLSGMALS GSSIKSEDDQ ESTPISSPEG  240
VFDRDAYSQS SPSLDMSSPD VGVAPMMRPD HPNYANLSSS LFICPAGGAG GLTAVAPPVG  300
GREAGDGFGY FEGLVAGERA SPPPPYPFSL LGGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-221510726129Heat shock factor protein 1
5d5v_B8e-221510726129Heat shock factor protein 1
5d5v_D8e-221510726129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071260.11e-131heat stress transcription factor C-1-like
TrEMBLA0A4D9A8E91e-177A0A4D9A8E9_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.E00326.1.p1e-124(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333