PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100049850041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 361aa    MW: 40229 Da    PI: 8.6707
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100049850041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001686108123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC++C+k++  +s+ k H +t+
  Ote100049850041|100049850041  86 WKCEKCSKRYAVQSDWKAHSKTC 108
                                   58*****************9998 PP

2zf-C2H211.90.00069116134523
                                   TTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                                   dCg++Fsr++++ +H   +
  Ote100049850041|100049850041 116 DCGTVFSRRDSFITHRAFC 134
                                   8**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-474107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.72E-581130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MTDESTILSQ DPVNGSDPPP KKKRNLPGTP GHNLPWKLKQ RSSKEVRKRV YVCPEKSCVH  60
HHPSRALGDL TGIKKHFCRK HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT REYKCDCGTV  120
FSRRDSFITH RAFCDALAQE TARVTATTNL NYHFMLKPII SSNHQNNVMD QSLPPSLTHS  180
IPINLQHHPL SHPPPYCNLN WDITTQSIPL TNPNEVSVPS LFTTHQSQAH QPDSARMSAT  240
ALLQKAAQIG ATTTDPSIIL GNFDSSVQDG NRLCGLYSSS SITSAFGSDV ESSVNDNSAI  300
NHLQMYSSSK RRRLQSEEIV EGETRDFLGV GINPICHPSS INGXXXXXXX XXXXXXEGFE  360
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3782151372Zinc finger protein JACKDAW
5b3h_F3e-3782151372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100239.11e-149zinc finger protein NUTCRACKER
SwissprotQ9ZWA63e-99IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A4D9B1431e-164A0A4D9B143_SALSN; Uncharacterized protein
STRINGEOX995371e-136(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]