PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100044430021
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 226aa    MW: 25012.8 Da    PI: 6.3301
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100044430021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601279e-4091091100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                                   +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ +++yeA+ar++dP+yG+v++i
  Ote100044430021|100044430021   9 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPMSDRCEAAVTIAYEAQARIQDPIYGCVSHI 89 
                                   7*************************89***************************************************** PP

                        DUF260  81 lklqqqleqlkaelallkee 100
                                   ++lqqq+ +l+a+la+lke+
  Ote100044430021|100044430021  90 FALQQQVVNLQAQLASLKEQ 109
                                   ***************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.5648110IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-379107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNMTGSGSPC GACKFLRRKC VRGCVFAPYF CHEQGATHFA AIHKVFGASN VSKLLAHLPM  60
SDRCEAAVTI AYEAQARIQD PIYGCVSHIF ALQQQVVNLQ AQLASLKEQV AHCIFNSSST  120
AAAANPNDHK FYGGDTHSFS QDVQSWLQSS QNPQFDANFN ASYYAGGGAM NLRNPNVKYE  180
NWGFVEENHS FGSFDSMEMQ SNEGQWPFQD DADDLQSVAF RYIQHS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080296.11e-123PREDICTED: LOB domain-containing protein 29
SwissprotQ9M2J77e-67LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A022S5501e-104A0A022S550_ERYGU; Uncharacterized protein
STRINGVIT_07s0005g03020.t016e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84462230