PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100038880011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 351aa    MW: 38646.9 Da    PI: 8.8773
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100038880011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002499121123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC++C+k +  +s+ k H +t+
  Ote100038880011|100038880011  99 WKCEKCSKKYAVQSDWKAHSKTC 121
                                   58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.1E-587120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
SRCRSCCAIT QDVDGDKPIH LRNLQQRLSE GPESXXXXXX XXGHNLPWKL KQRANKDQIK  60
KKVYICPEKS CVHHDPARAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT  120
CGTREYKCDC GTLFSRYLIN PTSILKDSFI THRAFCDALA EESARNLSFR NDDLSGNLIT  180
PQPNSGFNSF AGNSILADNN LQKPRLSLCD EGGADDGRLS GFALLRQPKL CEIAGVXXXX  240
XXXXXXXXXX XXKAAQMGST KSSPAFFGNA VGVMNSSSPP PSVMNFGACN NDLDLHQSMN  300
RHSGLMHGVE NSLTRDFLGV GGEGGPFLPQ ELVKFASMAP AMGLGHFTGN H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-3495173372Zinc finger protein JACKDAW
5b3h_F2e-3495173372Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016542707.11e-91PREDICTED: zinc finger protein JACKDAW-like isoform X1
RefseqXP_016542708.11e-91PREDICTED: zinc finger protein JACKDAW-like isoform X2
TrEMBLA0A4D8ZH051e-100A0A4D8ZH05_SALSN; Uncharacterized protein
STRINGGorai.009G418600.17e-86(Gossypium raimondii)