PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100032740001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 57aa    MW: 6137.25 Da    PI: 9.5899
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100032740001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26066.28e-21757150
                        DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalp 50
                                  +C aCk+lrrkC ++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp
  Ote100032740001|100032740001  7 PCGACKFLRRKCIRGCVFAPYFCHEQgATHFAAIHKIFGASNVSKLLAHLP 57
                                  7*************************89*******************9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.19657IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-18756IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCIR GCVFAPYFCH EQGATHFAAI HKIFGASNVS KLLAHLP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007200091.17e-37hypothetical protein PRUPE_ppa019939mg
RefseqXP_008235795.17e-37PREDICTED: LOB domain-containing protein 29-like
RefseqXP_011080296.12e-36PREDICTED: LOB domain-containing protein 29
SwissprotQ9SLB65e-35LBD17_ARATH; LOB domain-containing protein 17
TrEMBLM5W3D88e-37M5W3D8_PRUPE; Uncharacterized protein
STRINGPOPTR_0002s04200.11e-34(Populus trichocarpa)
STRINGGLYMA13G18210.11e-34(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84462230