PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100025990061
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 111aa    MW: 12082.2 Da    PI: 8.7164
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100025990061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.21.7e-302105199
                        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 
                                   +C++C+vlr++C+++C+l+p++     p++q++++ +++k++G++ +++l+++ p + r+++++sl+yeA+ r+  Pv+G+
  Ote100025990061|100025990061   2 SCNGCRVLRKGCVNNCTLRPCLqwiesPESQANATLFLAKFYGRAGLINLIQSGPAHLRPEIFRSLLYEACGRIISPVHGS 82 
                                   6******************************************************************************** PP

                        DUF260  77 vgvilklqqqleqlkaelallke 99 
                                   +g+++++++q +q+++e++ll++
  Ote100025990061|100025990061  83 LGLMSSGHWQRCQAAVEAVLLGA 105
                                   *****************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.5021107IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-252102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MSCNGCRVLR KGCVNNCTLR PCLQWIESPE SQANATLFLA KFYGRAGLIN LIQSGPAHLR  60
PEIFRSLLYE ACGRIISPVH GSLGLMSSGH WQRCQAAVEA VLLGAPLAMQ L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076777.18e-66PREDICTED: LOB domain-containing protein 42-like
SwissprotQ9CA304e-59LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A068TWE67e-62A0A068TWE6_COFCA; Uncharacterized protein
STRINGSolyc05g009320.2.16e-59(Solanum lycopersicum)
STRINGGSMUA_Achr4P13790_0015e-59(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494