PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100011220121
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 166aa    MW: 18369.5 Da    PI: 7.0123
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100011220121genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.45.1e-4311109199
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   +CaaCk+lrrkC ++C++apyfp e+p kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+
  Ote100011220121|100011220121  11 PCAACKFLRRKCLSGCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEILPHQREDAVNSLAYEAEARLKDPVYGCVGAIS 91 
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallke 99 
                                    lq+q+ ql++el+++++
  Ote100011220121|100011220121  92 VLQRQVLQLQKELDATNA 109
                                   *************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.05910111IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4211108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MASSSSYSNP PCAACKFLRR KCLSGCIFAP YFPPEEPTKF ANVHKIFGAS NVSKLLNEIL  60
PHQREDAVNS LAYEAEARLK DPVYGCVGAI SVLQRQVLQL QKELDATNAD LMRYTSNDYG  120
VNINHQRNVE RRMGYDSGSG SYDPNPGYSL PYSYGENPDH TGHGSN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097516.18e-89PREDICTED: LOB domain-containing protein 25-like
SwissprotQ8L8Q32e-69LBD25_ARATH; LOB domain-containing protein 25
TrEMBLF6GSI82e-77F6GSI8_VITVI; Putative uncharacterized protein
STRINGVIT_17s0000g09010.t017e-77(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669