PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100005190011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 317aa    MW: 34936.4 Da    PI: 5.1222
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100005190011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind96.23.4e-30271242101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES.......-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX CS
                  HSF_DNA-bind   2 Flkklyeiledeelkeliswsengnsfvvl.......deeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk 75 
                                   Fl+k+y++++d++++++isw+e+g++f           ++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++      
  Ote100005190011|100005190011  27 FLTKTYQLVDDRAIDDVISWNEDGSTFXXXxxxxxxxXPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVMPDR------ 101
                                   9***********************9997641111111579*********************************99...... PP

                                   TTSEEEEESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  76 ekiweFkhksFkkgkkellekikrkk 101
                                      weF ++ F++g+k+ll++i+r+k
  Ote100005190011|100005190011 102 ---WEFCNECFRRGEKKLLCDIQRRK 124
                                   ...*********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3219118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.7E-4523123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.58E-2924123IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.7E-2727123IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1701.9E-4181207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAPQPLDRSG SGESTAGDAP RSLPTPFLTK TYQLVDDRAI DDVISWNEDG STFXXXXXXX  60
XXXXPTEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVMPD RWEFCNECFR RGEKKLLCDI  120
QRRKIAPASS ATVAIAAATA AVLPTPAAPP RTVSPSDSGE EQVISSSNSP ARGREFSGST  180
SELVGENERL RKENVQLNKE LSQMKNLCNN IYVLMSNFGD LLPMTRFCEE MQTAVVSAAS  240
SGEESNIRSA AEEISARLFG VPIGVKRGGE GNSDMGLQLQ QPGGDIKSEP MDEDSSGDDV  300
KSSWLMRSNS RNRKVLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-211212317129Heat shock factor protein 1
5d5v_B2e-211212317129Heat shock factor protein 1
5d5v_D2e-211212317129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076201.11e-175heat stress transcription factor B-2a
RefseqXP_011076202.11e-175heat stress transcription factor B-2a
SwissprotQ6Z9C86e-76HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A4D9BG031e-159A0A4D9BG03_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.F00357.1.p1e-150(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]