PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100002990061
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 202aa    MW: 22372.8 Da    PI: 7.3616
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100002990061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.6e-36231142102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k++++++d+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+
  Ote100002990061|100002990061  23 FLTKTFQLVDDPTIDDLISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFA 94 
                                   9*****************************************************************99.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F++g+k ll++i+r+k 
  Ote100002990061|100002990061  95 NDCFRRGEKPLLREIQRRKI 114
                                   *****************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-5719112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.6E-3820112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.98E-3620112IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.4E-212346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.1E-3223112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-217486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MSGDSAGGGS GGGESQRSVP TPFLTKTFQL VDDPTIDDLI SWNEDGTTFI VWRPAEFARD  60
LLPKYFKHNN FSSFVRQLNT YGFRKVVPDR WEFANDCFRR GEKPLLREIQ RRKISAGNNX  120
XXXXXXXXXS VVNTQAIPTA VPAAVAIQIS PSNSGDEQVL SSNSSPAAAT PPXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXT IG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-272311229129Heat shock factor protein 1
5d5v_B1e-272311229129Heat shock factor protein 1
5d5v_D1e-272311229129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022845524.12e-81heat stress transcription factor B-2b-like
RefseqXP_022845525.12e-81heat stress transcription factor B-2b-like
SwissprotQ6Z9C86e-66HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A1S3XXH53e-77A0A1S3XXH5_TOBAC; heat stress transcription factor B-2b-like isoform X1
TrEMBLA0A1U7V7G93e-77A0A1U7V7G9_NICSY; heat stress transcription factor B-2b
STRINGMigut.A00803.1.p5e-79(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]