PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.14.00.335.1
Common NameOt14g02450, OT_ostta14g02090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family ERF
Protein Properties Length: 134aa    MW: 15043.1 Da    PI: 9.8705
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.14.00.335.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.81.8e-1078127155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      sgy+GV+++  + +++A++ +p     r  + +lg +++ae+Aa a+++a  + +g
  gw1.14.00.335.1  78 SGYRGVTRHA-NSKFEARLGVP-----RsNHMYLGLYDSAEKAAVAYDQALVQVRG 127
                      89*****998.8*********9.....449*******************9877665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.47E-1478134IPR016177DNA-binding domain
PfamPF008478.5E-578124IPR001471AP2/ERF domain
CDDcd000188.59E-1778134No hitNo description
PROSITE profilePS5103215.18579134IPR001471AP2/ERF domain
SMARTSM003802.8E-1379134IPR001471AP2/ERF domain
PRINTSPR003678.2E-68091IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-1580134IPR001471AP2/ERF domain
PRINTSPR003678.2E-6117134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
QVYLGGYLEE EFAAEAFDII VLKLARIGSR SRTGSRPLKM NFPEGRYANL LQLIDSLTLD  60
ELIMEVRRHS EGFARGSSGY RGVTRHANSK FEARLGVPRS NHMYLGLYDS AEKAAVAYDQ  120
ALVQVRGRRA STNF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003083036.11e-91DNA-binding domain
TrEMBLA0A1Y5IG601e-91A0A1Y5IG60_OSTTA; Uncharacterized protein
TrEMBLQ00VW73e-90Q00VW7_OSTTA; DNA-binding domain
STRINGQ00VW74e-91(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.13e-22AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]