PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.08.00.335.1
Common NameOT_ostta08g04170
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family ERF
Protein Properties Length: 131aa    MW: 14542.2 Da    PI: 8.1852
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.08.00.335.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.92.9e-0968112149
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaa 49 
                      s+++GV+ +  +g+++A+I   +   g +k+ +lg f+t+ eAa a++ a
  gw1.08.00.335.1  68 SKFRGVTXHA-KGKFEARIGQmV---G-KKYRYLGLFDTESEAAVAYDIA 112
                      79*****998.7******99977...2.5**********88*******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.0023139IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-8134IPR016177DNA-binding domain
PROSITE profilePS5103210.296133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-9133IPR001471AP2/ERF domain
CDDcd000185.30E-1968128No hitNo description
SuperFamilySSF541716.54E-1568128IPR016177DNA-binding domain
SMARTSM003801.4E-1869131IPR001471AP2/ERF domain
PROSITE profilePS5103213.65669126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-1369126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
VYLGGFDSEE QAALAYDVIA VKCRGIKAQT NFDMRNYAQE LANLDGIEKD DLVLSLRRQS  60
KGHAKGSSKF RGVTXHAKGK FEARIGQMVG KKYRYLGLFD TESEAAVAYD IACVREKGLQ  120
AVTNFDISEY S
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022841072.11e-89DNA-binding domain
SwissprotB8AMA94e-39AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB54e-39AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A090MD563e-88A0A090MD56_OSTTA; DNA-binding domain
STRINGA0A090MD564e-89(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-40AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]
  2. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  3. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  4. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]