PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_Chr_04.00010339
Common NameOT_ostta04g05010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family ERF
Protein Properties Length: 416aa    MW: 42565.2 Da    PI: 8.7957
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_Chr_04.00010339genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.99.4e-224191155
                                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                          s+y+GVr+++ +g+W+AeIrdp   + r +r +lg+f+taeeAa+a++aa++ ++g
  estExt_fgenesh1_pg.C_Chr_04.00010339 41 SQYRGVRQRP-WGSWAAEIRDP---N-RgARLWLGTFDTAEEAARAYDAAARHIRG 91
                                          78********.**********8...3.35***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-154191IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-224199IPR016177DNA-binding domain
CDDcd000181.72E-194199No hitNo description
PROSITE profilePS5103223.9334299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-334299IPR001471AP2/ERF domain
SMARTSM003806.6E-3842105IPR001471AP2/ERF domain
PRINTSPR003672.7E-114354IPR001471AP2/ERF domain
PRINTSPR003672.7E-116581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAGRGGRKSS PDVDSEVDLD DVDVGDEEGK GDKQSKKATT SQYRGVRQRP WGSWAAEIRD  60
PNRGARLWLG TFDTAEEAAR AYDAAARHIR GPNAKTNFQL APGEEPPPFV LPEPPSGGRG  120
MGGGAGGGGR GRGSDMGLPS TGYGGAGPSR QPNMMKKQKP VKGGVSTIYG FGTPTGEKSG  180
VPKRGSIGFG SGIDLSALAN ANLALANQNL ASAGSARKES ESGFMKLFAN GSLGDTPSST  240
GGSPLIMPES IEFRDGIFGM SGEIPVISTK RDRGPSSAFF GTSFGVAGSF GSMFPPDMGL  300
SSTPDAGDGS NFSGFPMSPN TGIDGDFNVG SLGTIGDLGD ALPAVGSFEL GSPVDLDSMM  360
NSMSRNSGGK AQPMASILGK PKKQEHDSPL GRASTRSSRD TRSKSAQLDA LSALK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1838981071Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116123GGRGMGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022838868.10.0DNA-binding domain
TrEMBLA0A090M4Z90.0A0A090M4Z9_OSTTA; DNA-binding domain
TrEMBLA0A454XSF60.0A0A454XSF6_OSTTA; Uncharacterized protein
STRINGA0A090M4Z90.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.12e-18cytokinin response factor 1
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]