PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 1300010209
Common NameOt13g02090, OT_ostta13g02000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family ERF
Protein Properties Length: 289aa    MW: 32562.3 Da    PI: 10.4681
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
1300010209genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.88.4e-11140188154
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                 s y+GV++d ++g+W+AeI+        ++ slg + ++ eAa+a ++a ++ +
  1300010209 140 SSYRGVTRDMRSGKWRAEIHRD-----GASLSLGVYESEREAAEAFDRAVLAVK 188
                 67****************9993.....3**********99********988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.92653110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-653100IPR001471AP2/ERF domain
SMARTSM003800.008553111IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-753101IPR016177DNA-binding domain
SuperFamilySSF541712.22E-12140198IPR016177DNA-binding domain
CDDcd000186.84E-12140196No hitNo description
PfamPF008471.1E-6140187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-13141197IPR001471AP2/ERF domain
PROSITE profilePS5103215141197IPR001471AP2/ERF domain
SMARTSM003805.6E-12141203IPR001471AP2/ERF domain
PROSITE profilePS510329.045232288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MPASSRNRRR GDLSEHPVGI IATPGSNENL NAPSTSGTKR KHNQNENSST STKFRGVTRS  60
GNNYRAFIAR EGKRYTLGQF TSAEAAAEAW DRASLTLGGT PKNFDEARYE RERAKLIDPS  120
YTIDDLRREY GMGAVVKAKS SYRGVTRDMR SGKWRAEIHR DGASLSLGVY ESEREAAEAF  180
DRAVLAVKGP NGKTNFSPEN YPERLIPKTL EEYRDSLANL KTRKGGGKAT SKYEGVRRYV  240
HEWKNGEVTV KWRVELTING KKKQIGYFKT EEEAAREVER RRFELKQS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003082680.10.0DNA-binding domain
TrEMBLA0A454Y6170.0A0A454Y617_OSTTA; Activator of sporamin LUC 1
TrEMBLQ00WX40.0Q00WX4_OSTTA; DNA-binding domain
STRINGQ00WX40.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP552679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.14e-13AP2 family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]