PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0800010130
Common NameOT_ostta08g01330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family YABBY
Protein Properties Length: 255aa    MW: 29533.1 Da    PI: 10.0084
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0800010130genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY21.28.4e-07152201112160
       YABBY 112 vpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                  p+  ++   k +++P+ay  f  ee qrik + P++ h e     ++ W
  0800010130 152 KPKvNVKGETKPKKAPTAYLVFAEEERQRIKLAEPELKHDEISQRLSRTW 201
                 3441356667889***************************9877766666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF470959.03E-81268IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.6E-71470IPR009071High mobility group box domain
CDDcd000846.31E-41568No hitNo description
PROSITE profilePS5011810.6321593IPR009071High mobility group box domain
SMARTSM003980.06866144IPR009071High mobility group box domain
SuperFamilySSF470957.99E-1070145IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.105.0E-972145IPR009071High mobility group box domain
CDDcd000840.0031372140No hitNo description
SuperFamilySSF470958.12E-17147224IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.4E-15162224IPR009071High mobility group box domain
SMARTSM003982.2E-11162232IPR009071High mobility group box domain
CDDcd013901.20E-11163226No hitNo description
PfamPF005051.9E-15163226IPR009071High mobility group box domain
PROSITE profilePS5011815.71163226IPR009071High mobility group box domain
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVEGKLDGEI LPAPPKRALT AYLIFCQRHR ERIMREIQPD PSSKFTKDQM QQVTTRLAGL  60
WNNISPKELK ETAYLIFCSR HRKDIMRQIH KDPLAKFTRA EMQQVTTTLA DMWNKISPSE  120
LASCREEAKV ELEKYRALKA EYRAPVYGPA KKPKVNVKGE TKPKKAPTAY LVFAEEERQR  180
IKLAEPELKH DEISQRLSRT WKAIDENEKR RYQARAEEQK QNLERQSILP SNSLAGEHLP  240
MMSMASYDID PRAI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840942.11e-180High mobility group box domain
TrEMBLA0A090N4U41e-178A0A090N4U4_OSTTA; High mobility group box domain
STRINGA0A090N4U41e-179(Ostreococcus tauri)
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]