PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g43790.1
Common NameLOC9272516, Os12g0634500, OSNPB_120634500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 169aa    MW: 17921.3 Da    PI: 11.5446
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g43790.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.1e-1060108149
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                       e++++r rr+++NRe+ArrsR+RK+  ++eL+ k+ +L a  ++L  +l
  LOC_Os12g43790.1  60 EERRRRLRRRISNRESARRSRARKQRHLDELRAKASALRATSRDLVARL 108
                       68899**********************************9999988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-656109No hitNo description
SMARTSM003382.1E-758124IPR004827Basic-leucine zipper domain
PfamPF001704.8E-760108IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.5362108IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.88E-864109No hitNo description
PROSITE patternPS0003606782IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAGLPFPSDS DTALEAFLAD IGFGAPCPEA APAPSPSHPD TTAAAATDEP VMAGDDQADE  60
ERRRRLRRRI SNRESARRSR ARKQRHLDEL RAKASALRAT SRDLVARLRG ARARAALVAL  120
TNAQLRDEAG KLALRLAAAR RVIALRQLYS AAAAGGGFEM QALASLIA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17683RRSRARKQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QLP2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g43790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g43790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL8318090.0AL831809.3 Oryza sativa chromosome 12, . BAC OJ1268_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619047.11e-111PREDICTED: ocs element-binding factor 1
TrEMBLA0A0E0RKF61e-111A0A0E0RKF6_ORYRU; Uncharacterized protein
TrEMBLQ2QLP21e-111Q2QLP2_ORYSJ; BZIP transcription factor family protein, expressed
STRINGLOC_Os12g43790.11e-110(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151251919
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]