PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g41700.1
Common NameLOC4352767, LOL2, Os12g0611000, OsJ_36836
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LSD
Protein Properties Length: 173aa    MW: 18054 Da    PI: 8.5504
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g41700.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.55.3e-14731125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      C+gCr++L YPrGApsV+Ca+C++V
  LOC_Os12g41700.1  7 CHGCRNILLYPRGAPSVCCAVCHAV 31
                      ************************9 PP

2zf-LSD148.41.5e-154771125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      CggCrtlL+Y+r+A+sVRC++CdtV
  LOC_Os12g41700.1 47 CGGCRTLLMYTRNATSVRCSCCDTV 71
                      ************************9 PP

3zf-LSD150.92.5e-1685109125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       Cg+C+t+L+YP+GApsV+Ca+C+++
  LOC_Os12g41700.1  85 CGQCQTVLMYPYGAPSVKCAICNFI 109
                       ***********************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.8E-12431IPR005735Zinc finger, LSD1-type
PfamPF069433.8E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.3E-154474IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-124771IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.4E-1182110IPR005735Zinc finger, LSD1-type
PfamPF069432.2E-1485109IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
GO:0005634Cellular Componentnucleus
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MQSQIVCHGC RNILLYPRGA PSVCCAVCHA VSSTAPSPGM DIAHLICGGC RTLLMYTRNA  60
TSVRCSCCDT VNLVRPVSSI AHLNCGQCQT VLMYPYGAPS VKCAICNFIT NTGMNTMRHL  120
PPNGTSYTAP STSAPTTQSQ NVTVVVENPM TVDAKGKLVS NVVVGVTTGG KK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.240460.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379885000.0
Expression AtlasQ2QMB3-
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g41700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g41700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118370.0AK111837.1 Oryza sativa Japonica Group cDNA clone:J023139G05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620418.11e-122PREDICTED: protein LOL2
SwissprotQ2QMB31e-124LOL2_ORYSJ; Protein LOL2
TrEMBLA0A0D3HWM11e-121A0A0D3HWM1_9ORYZ; Uncharacterized protein
TrEMBLI1R7S11e-121I1R7S1_ORYGL; Uncharacterized protein
STRINGLOC_Os12g41700.11e-122(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11461753
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.71e-49LSD family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]