PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g41650.3
Common NameLOC4352761, Os12g0610200, OSNPB_120610200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 446aa    MW: 47020.3 Da    PI: 6.5997
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g41650.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH543e-17273319455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  LOC_Os12g41650.3 273 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 319
                       6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.30E-19266323No hitNo description
Gene3DG3DSA:4.10.280.104.6E-21266326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-21267332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.559269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-14273319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-19275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MNQFVPDWNT TSMGDGFAPL GEDDGLVELL WCNGHVVMQS QAPRKPPRPE KTTAAAAAAM  60
AEDESASWFQ YPVDDVLEKD LFTELFGEMT AAGGGGGDVR RAACKEERGA VAAFQSRMMP  120
PPWPARGKAE FGDVDDVCGV SEVVMAKMDG AAAAETVGES SMLTIGSSIC GSNHVQTPPV  180
GNGKAGAGTA GAARRAHDTA TVASSSMRSR SCTAKAEPRD VAAAGVGGKR KQRGGAAMES  240
GSPSEDVEFE SAAATCSPAQ KTTTAKRRRA AEVHNLSERR RRDRINEKMK ALQELIPHCN  300
KTDKASMLDE AIEYLKSLQL QLQMMWMGGG MAPPAVMFPA AGVHQYMQRM GAVGMGPPHM  360
ASLPRMPPFM APPPAAVQSS PVVSMADPYA RCLAVDHLQP PPPMHYLQGM SFYQLAAAKN  420
LQQQQNTAEA PPPPPAGGNR AAADS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266281RRRAAEVHNLSERRRR
2277282ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.116750.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329767810.0
Expression AtlasQ0IM00-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g41650.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g41650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8297130.0CT829713.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240D01, full insert sequence.
GenBankAK0667630.0AK066763.1 Oryza sativa Japonica Group cDNA clone:J013074J19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618078.10.0PREDICTED: transcription factor PIF4 isoform X2
RefseqXP_015618079.10.0PREDICTED: transcription factor PIF4 isoform X2
TrEMBLA0A0E0RJV20.0A0A0E0RJV2_ORYRU; Uncharacterized protein
TrEMBLA2ZML00.0A2ZML0_ORYSI; Putative uncharacterized protein
TrEMBLQ0IM000.0Q0IM00_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGBGIOSGA037772-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os12g41650.20.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.32e-33phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]