PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g40960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 139aa    MW: 14755.1 Da    PI: 6.7139
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g40960.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.71.2e-075312955
               AP2 29 krfslgkfgtaeeAakaaiaarkkleg 55
                       r ++g+f+taeeAa a++a +++l+g
  LOC_Os12g40960.1  5 SRSWVGTFDTAEEAAWAYDAVARRLYG 31
                      567*********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.825139IPR001471AP2/ERF domain
SMARTSM003803.3E-5145IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-11339IPR016177DNA-binding domain
CDDcd000181.30E-13340No hitNo description
Gene3DG3DSA:3.30.730.101.9E-14339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MIKGSRSWVG TFDTAEEAAW AYDAVARRLY GPNARTNFRI PPPPVAPLLP APAVANKKMD  60
SKRKKPVVVA EMVAPAGVEP AAGEMAPVLL GNALEATNGW EFEPYSCMGL VVGGAVYNFA  120
DEPALVEKAF VVPFRNPL*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QMJ3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g40960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g40960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL8375280.0AL837528.5 Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664718.24e-16PREDICTED: dehydration-responsive element-binding protein 1B-like
TrEMBLQ2QMJ31e-94Q2QMJ3_ORYSJ; AP2 domain containing protein
STRINGLOC_Os12g40960.13e-94(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP156151014
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]