PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g40920.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 165aa    MW: 18771.5 Da    PI: 9.4257
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g40920.4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.93.9e-1781136459
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                        kr+rr+ +NRe+ArrsR+RK+a +  Le  v +L +eN +L+k+l+ +++++++ 
  LOC_Os12g40920.4  81 AKRTRRMLSNRESARRSRKRKQAHLNDLESQVSQLRSENASLQKRLSDMTQKYKQS 136
                       69*****************************************7777777776654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-1874142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.04780143IPR004827Basic-leucine zipper domain
PfamPF001701.9E-1481135IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-1382134No hitNo description
Gene3DG3DSA:1.20.5.1702.8E-1482135No hitNo description
CDDcd147021.74E-1683133No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MAFQLEAKLQ ESSLGYLNLQ ASDTSQLVSQ DSFNGYGSTR VTNSNAIHED DDQGKPANSG  60
TSKEQSDDDG DLEEDTDPVN AKRTRRMLSN RESARRSRKR KQAHLNDLES QVSQLRSENA  120
SLQKRLSDMT QKYKQSTTEY GNLQDDMNAM RRKVWRCKKR NKTF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100RRSRKRK
294101RRSRKRKQ
396101SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.264377e-83leaf| panicle| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977293727e-83
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g40920.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g40920
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879810.0AK287981.1 Oryza sativa Japonica Group cDNA, clone: J075085P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620823.11e-114PREDICTED: light-inducible protein CPRF2-like isoform X4
TrEMBLA0A0N7KUB61e-108A0A0N7KUB6_ORYSJ; Os12g0601800 protein
STRINGBGIOSGA037742-PA1e-103(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-17basic leucine zipper 9