PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g40920.1
Common NameLOC107276775, OsJ_36768
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 302aa    MW: 32115.5 Da    PI: 5.4719
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g40920.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.41.2e-16115170459
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                        kr+rr+ +NRe+ArrsR+RK+a +  Le  v +L +eN +L+k+l+ +++++++ 
  LOC_Os12g40920.1 115 AKRTRRMLSNRESARRSRKRKQAHLNDLESQVSQLRSENASLQKRLSDMTQKYKQS 170
                       69*****************************************7777777776654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-18108176IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.047114177IPR004827Basic-leucine zipper domain
PfamPF001707.2E-14115169IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.5E-14116169No hitNo description
SuperFamilySSF579592.25E-12116168No hitNo description
CDDcd147021.48E-18117167No hitNo description
PROSITE patternPS000360119134IPR004827Basic-leucine zipper domain
PfamPF124981.2E-15183279IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKRGGAGVGG GGGGGDPGAY AAVLKTKLDL YCAAVAKSME AKLQESSLGY LNLQASDTSQ  60
LVSQDSFNGY GSTRVTNSNA IHEDDDQGKP ANSGTSKEQS DDDGDLEEDT DPVNAKRTRR  120
MLSNRESARR SRKRKQAHLN DLESQVSQLR SENASLQKRL SDMTQKYKQS TTEYGNLQDD  180
MNAMRRKVNI AEEAVRRVTG IGLQLFTTSE MPASSMPVSS GVSDAASAAA AAALVEDDWT  240
NCSLPDEAIP VPSAAMALRS PSVRRVASLE NLQKRIHAGD VTHFEAASAL SLPEATACDN  300
K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134RRSRKRK
2128135RRSRKRKQ
3130135SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.264370.0leaf| panicle| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977293720.0
Expression AtlasQ2QMJ7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g40920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g40920
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376610.0CT837661.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620821.10.0PREDICTED: light-inducible protein CPRF2-like isoform X2
TrEMBLQ2QMJ70.0Q2QMJ7_ORYSJ; BZIP transcription factor family protein, expressed
STRINGLOC_Os12g40920.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18391639
MonocotsOGMP75952943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.24e-23bZIP family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]