PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g40630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 250aa    MW: 26995.4 Da    PI: 4.7373
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g40630.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64e-12105147955
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++RR +iN+ + +L++l+P +    +k ++ a++L k+++Y+ksLq
  LOC_Os12g40630.1 105 MQKRRCKINENLKTLQQLVPVC----DKSNNQASTLDKTIRYMKSLQ 147
                       69*******************9....788*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.8296146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-5102152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12106154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-12106156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.17E-10106148No hitNo description
PfamPF000103.1E-9106147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEMTSYNDVD AGDMFAAADY YSAGAGGDLF DMVWPGRRRR EEDNTSGCLP LSPPPPPELA  60
VDDQLLAGGD GGGGKPVAVA VAEDDDSGER WTEDQVPTDE GICVMQKRRC KINENLKTLQ  120
QLVPVCDKSN NQASTLDKTI RYMKSLQQHA QAMSVGCSMK TAEAAGVTCP FLPPPPSSAL  180
LVIVEEGPTR PWDATARSTS AAATSFDHHH HGALIEKLLQ VVQPYMLSLK TSVRENNAMV  240
MQKPNFYHS*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QMM8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g40630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g40630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126201e-135CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankAP0149681e-135AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL7317431e-135AL731743.2 Oryza sativa chromosome 12, . BAC OSJNBa0001B02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ2QMM80.0Q2QMM8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein
STRINGLOC_Os12g40630.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164341012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-12phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]