PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g40590.1
Common NameLOC4352709, Os12g0597800, OsJ_36752, OSNPB_120597800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 266aa    MW: 28864.7 Da    PI: 8.2901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g40590.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.7e-14156202455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h   E+rRR+riN++f  L++l+P +      K s +++L ++++Y+ksLq
  LOC_Os12g40590.1 156 THGLTEKRRRSRINEKFKMLQRLVPGC-----DKCSQSSTLDRTIHYMKSLQ 202
                       78999*********************9.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.78E-14138206No hitNo description
SuperFamilySSF474593.66E-17150215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.186152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17155208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-11156202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-13158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MMSFPYSSGD LGEATTAAAA AVDMITLDQM FRDYDASTGD DLFELVWESC GGGEIDSGAG  60
EVQPAGVPCC RRLLPGSSPE PTSEDEMAAW LSTIVTGSGG GGGDDVAAGG DHQDPAVKKP  120
DGEPLTEKMD KKLPTRTEER RRVKHKARRN PGYAETHGLT EKRRRSRINE KFKMLQRLVP  180
GCDKCSQSST LDRTIHYMKS LQQQLQAMYP TMVRPAAVYP VVQPPPAFAA GGPPAASQGG  240
LHRHRRLMVV VSVHHRCRCF RLGRQ*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154894210.0
Expression AtlasQ2QMN2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g40590.1
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g40590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1080420.0AK108042.1 Oryza sativa Japonica Group cDNA clone:002-137-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619633.10.0PREDICTED: putative transcription factor bHLH056
TrEMBLB8BMU40.0B8BMU4_ORYSI; Putative uncharacterized protein
TrEMBLQ2QMN20.0Q2QMN2_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGBGIOSGA037731-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os12g40590.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
MonocotsOGMP165781111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.11e-15bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]