PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g40570.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 366aa    MW: 38551.7 Da    PI: 10.2433
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g40570.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.41.2e-27297350355
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYege 55 
                       D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYe++
  LOC_Os12g40570.1 297 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEEN 350
                       9*************************988**********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-18248293IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-29283350IPR003657WRKY domain
PROSITE profilePS5081126.36290356IPR003657WRKY domain
SuperFamilySSF1182903.66E-23293349IPR003657WRKY domain
SMARTSM007741.8E-30295355IPR003657WRKY domain
PfamPF031066.7E-23297349IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEEEVEAANR AAVESCHRVL ALLSQQQDPA LLRSIASETG EACAKFRKVV SLLGNGGGGG  60
GGGGGGGHAR GRMAGRSRPS AVLREKGFLE SSSGGGQLGM MMSGAATPST SSAAHLRNRI  120
GGGSGVPPDS LRGLDLVSSS SKGGAHQFDP PKLVQPLSVQ FQFGATAHRY PFQQHQHQQK  180
LQAEMFKRSN SGISLKFDSP SATGTMSSAF MSSLSMDGSV ASLEGKPPFH LISGPVASDP  240
VNAHHVPKRR CTGRGEDGSG KCATTGRCHC SKRRKLRIKR SIKVPAISNK IADIPPDEYS  300
WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERCVDDP AMLIVTYEEN AEAPSFCSGT  360
VGPVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-17283348266WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.190130.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329806720.0
Expression AtlasQ2QMN5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g40570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g40570
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706480.0AK070648.1 Oryza sativa Japonica Group cDNA clone:J023062B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620342.10.0PREDICTED: protein WRKY1
SwissprotQ32SG42e-86WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A0E0RJK80.0A0A0E0RJK8_ORYRU; Uncharacterized protein
TrEMBLQ2QMN50.0Q2QMN5_ORYSJ; WRKY DNA binding domain containing protein, expressed
STRINGLOC_Os12g40570.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18171541
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-65WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]