PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g38960.1
Common NameOsJ_36648
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 364aa    MW: 39947.5 Da    PI: 6.8574
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g38960.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.56.1e-077192223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      +C+ C+k+Fs++ +L+ H+++H
  LOC_Os12g38960.1 71 QCQMCSKVFSTSGSLREHMMMH 92
                      7*******************99 PP

2zf-C2H216.42.5e-05275297123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ CgksF +   L  H+r+H
  LOC_Os12g38960.1 275 HRCNTCGKSFGSGQALGGHMRRH 297
                       79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.9E-101034IPR007087Zinc finger, C2H2
PROSITE profilePS501579.0581039IPR007087Zinc finger, C2H2
SMARTSM003550.571032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801132IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.577097IPR007087Zinc finger, C2H2
SMARTSM003553.3E-47092IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-77196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.86E-107192No hitNo description
PfamPF138944.4E-47192No hitNo description
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576671.86E-10270297No hitNo description
Gene3DG3DSA:3.30.160.603.6E-4275297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.3E-11275298IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.907275302IPR007087Zinc finger, C2H2
SMARTSM003550.0079275297IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAPRGKPWKH CCNKCDKSFR SGNALGGHMS CHRSVGNQPK STSSPPTVVD LHMPLLSSCD  60
DNLLLLPPET QCQMCSKVFS TSGSLREHMM MHGGEKVVVK AEEEAAGLIE ALGIADSMQD  120
VMVFSSVKRK RSFRSKRQTP ALSLEEIEAA DALLLLSGCF DKTSAYEDCY LGDIEDSSLR  180
SIVLTEVNMN AVDRCSVRSV GSKEPINDNN SGYKDCYGQS DKENCLIVPK EEMDPNDFDH  240
ELVRDAALRK PRTDNSDEEM KFGDLPAAAM KDNSHRCNTC GKSFGSGQAL GGHMRRHYVR  300
KCNRQRGVAD HAGSVLMKVQ KLKLRLDPIL FDVTLPALTD GDCCISVGVK PEPQLWCVTS  360
NLQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.329960.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329873500.0
Expression AtlasB9GDY3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g38960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g38960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL9287740.0AL928774.3 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619008.10.0PREDICTED: uncharacterized protein LOC4352630 isoform X1
TrEMBLB9GDY30.0B9GDY3_ORYSJ; Uncharacterized protein
TrEMBLQ2QN520.0Q2QN52_ORYSJ; Os12g0578800 protein
STRINGLOC_Os12g38960.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1465022
MonocotsOGMP91122229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-07C2H2 family protein