PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g37415.1
Common NameLOC9271102, OsOBF1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 146aa    MW: 16142.1 Da    PI: 6.7906
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g37415.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.49.9e-162484363
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                      + +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+a N +   +++e+  ++a++++e+
  LOC_Os12g37415.1 24 DHRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVLARASEIAGQYARVEQEN 84
                      679*****************************************************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-172286IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.2432487IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.6E-102470No hitNo description
PfamPF001702.7E-122584IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.75E-102680No hitNo description
CDDcd147024.40E-152778No hitNo description
PROSITE patternPS0003602944IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006971Biological Processhypotonic response
GO:0009267Biological Processcellular response to starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MSSSSLSPAG SSDGDSAGVV VAADHRREKR RLSNRESARR SRLRKQQHLD ELVQEVARLQ  60
ADNARVLARA SEIAGQYARV EQENTVLRAR AAELGDRLRS VNEVLRVVEE FSGVAMDIQE  120
ECPPDDPLLR PWQIPCPAAA HMLQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13844RRSRLRK
23845RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.690880.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO710610970.0
Expression AtlasQ4H4C4-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00419DAPTransfer from AT3G62420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g37415.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g37415
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAB1852800.0AB185280.1 Oryza sativa Japonica Group OsOBF1 mRNA for bZIP protein, complete cds.
GenBankAL9350720.0AL935072.4 Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619873.11e-100PREDICTED: ocs element-binding factor 1
SwissprotP240681e-78OCS1_MAIZE; Ocs element-binding factor 1
TrEMBLA0A0D3HVP51e-100A0A0D3HVP5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0BU261e-100A0A0E0BU26_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0CHQ31e-100A0A0E0CHQ3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0JB711e-100A0A0E0JB71_ORYNI; Uncharacterized protein
TrEMBLA0A0E0RIR11e-100A0A0E0RIR1_ORYRU; Uncharacterized protein
TrEMBLA2ZLM81e-100A2ZLM8_ORYSI; Putative uncharacterized protein
TrEMBLI1R7741e-100I1R774_ORYGL; Uncharacterized protein
TrEMBLQ4H4C41e-100Q4H4C4_ORYSJ; BZIP protein
STRINGBGIOSGA037592-PA1e-100(Oryza sativa Indica Group)
STRINGLOC_Os12g37410.11e-100(Oryza sativa Japonica Group)
STRINGLOC_Os12g37415.11e-100(Oryza sativa Japonica Group)
STRINGORGLA11G0215100.11e-100(Oryza glaberrima)
STRINGORGLA12G0138000.11e-100(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5511678
MonocotsOGMP188635100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.11e-35basic region/leucine zipper motif 53
Publications ? help Back to Top
  1. Shimizu H, et al.
    LIP19, a basic region leucine zipper protein, is a Fos-like molecular switch in the cold signaling of rice plants.
    Plant Cell Physiol., 2005. 46(10): p. 1623-34
    [PMID:16051676]
  2. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]