PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g33950.1
Common NameOsJ_36303
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 110aa    MW: 12128.3 Da    PI: 10.6294
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g33950.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.8e-10452348
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                      +WTt   +l+ +a + + ++   +W  +ar +g g+t++++k ++ k+l
  LOC_Os12g33950.1  4 SWTTKQNKLFERALATYDKDtpgRWQNVARAVGGGKTAEEVKRHYDKLL 52
                      7********************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.3E-8154IPR001005SANT/Myb domain
PROSITE profilePS5129310.589150IPR017884SANT domain
SuperFamilySSF466893.59E-12359IPR009057Homeodomain-like
CDDcd001672.00E-5452No hitNo description
PfamPF002493.9E-7452IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-4453IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MSSSWTTKQN KLFERALATY DKDTPGRWQN VARAVGGGKT AEEVKRHYDK LLQDLHHIES  60
AGRQGSQYGG SSSSKSKGGS SSGEQRYRNR DWKQQPGLHS GAVKRASQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-234891089RADIALIS
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QPM6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g33950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g33950
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2811541e-141JF281154.1 Oryza sativa Indica Group strain WA-CMS mitochondrion, complete genome.
GenBankBX0004561e-141BX000456.3 Oryza sativa chromosome 12, . BAC OSJNBa0050D07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-141AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAP0125281e-141AP012528.1 Oryza rufipogon mitochondrial DNA, complete genome, strain: RT102C.
GenBankAP0125271e-141AP012527.1 Oryza rufipogon mitochondrial DNA, complete genome, strain: RT98C.
GenBankAL7317381e-141AL731738.6 Oryza sativa chromosome 12, . BAC OSJNBa0005K20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619271.12e-56PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1734e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLQ2QPM65e-75Q2QPM6_ORYSJ; Myb-related protein, putative
STRINGLOC_Os12g33950.11e-74(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3471298
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-26RAD-like 6
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]