PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g32140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 745aa    MW: 85795.8 Da    PI: 6.8637
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g32140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.22.7e-1888166190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fYn+YAk+ GFsvrk+              +fvCskeg r+++  k ++++rr+ra tr++C a+l +k++k +g w v+++  +HnH+l+
  LOC_Os12g32140.1  88 NFYNSYAKRKGFSVRKE-------------LRFVCSKEGIRDPSLVKpEDRARRERALTRMECAASLSIKLDKkRGIWFVDNFIDDHNHPLT 166
                       6*************986.............58***********9877688999*******************99****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.4E-1588166IPR004330FAR1 DNA binding domain
PfamPF105514.7E-32288379IPR018289MULE transposase domain
PROSITE profilePS5096610.559455505IPR007527Zinc finger, SWIM-type
PfamPF044343.8E-7479504IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-4480507IPR006564Zinc finger, PMZ-type
SuperFamilySSF577566.02E-5617655IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.614634649IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MGEFRGTGNK DDAKCGKDCS TDSYMDNSSN TNDDDYAECS LGDHNKSQPN DPSSSHNVFH  60
SVEEDNVALD EYWNIVQMNF QTEDECYNFY NSYAKRKGFS VRKELRFVCS KEGIRDPSLV  120
KPEDRARRER ALTRMECAAS LSIKLDKKRG IWFVDNFIDD HNHPLTSHDE TPFLRSHRKI  180
KDFQKSEIHS LESIGIRKNV IMKVMKCKYG GYDKVGFVKK DLYNYSSRYK RSRILEGDAS  240
ATLELMKKRR DKDPGFFYEY QVDDEGRLKN LFWCDAQSRM DYQSFGDVVF DSTQRMNKYN  300
MPFIPFVGLN HHRQTTIFAC GIVSDECVES YTWFLQVFLR AMCQQKPRSI ITDSDNAMMK  360
AIRQVLPDTD HRVCSWHIER VEHYEVCVSE LREKEAEFDS KASQSWPATI TDSPEIEESA  420
GHIFTSANFD LVQKELQKLD GLHVDVVQDG KGERYMVTSE QKSARKCYVD YTRIGGNHDI  480
RCSCRKMERE GIPCKHILSV LKHLEVKVKE IPKCCVLQRL SKNAKADLPS VRKSDLHVWT  540
EKQKNYYELN ARGSELFDLA SNSCELFGEV KEYMESQLSK ISSSNAATKK HTHVDEVGET  600
SHRPEGSVLD PICVATKGAP RSMKGWDEHR PRLCSRCRQP GHDIRRCPEA KREEQDLALI  660
ESLKIVVILY DINLHCLETL RVKDEELQNL ANNIRAQDAT IKEIADKLTQ TAEAAEAAAS  720
AAHTMDEHRI LLCSEIERLR HYKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251KKRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.831841e-163panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QQ59
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g32140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g32140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL9548280.0AL954828.3 Oryza sativa chromosome 12, . BAC OSJNBa0022M02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619261.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ2QQ590.0Q2QQ59_ORYSJ; Transposon protein, putative, unclassified
STRINGLOC_Os12g32140.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-70FAR1-related sequence 5
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]