PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g31430.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 303aa    MW: 32166.3 Da    PI: 10.2408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g31430.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.7e-07166210755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ r RR+ri s+ +eL +l+P a    ++ +s ae+L+ A ++++ Lq
  LOC_Os12g31430.1 166 AAARERRRRISSKTAELSRLIPGA----ARMNSTAEMLQAAARHVRLLQ 210
                       567899999**************8....577***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.982159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-8161218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-7162218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-6165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-5166210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSTATTRLGV RRPTPAPVFD FDRLLLGSSS GGGMVGDDVV ADALLGFAYD PPAHGAAALD  60
DVLAPLPGAD KRPRERGVVA DGRSFRRAGA ALPAPPTELV TRFVPTPPPL PPVQQQQQQQ  120
RWELPDAVFV RGAGAAEAKK GGAAASHDDH DDGRHHHHHN QAVQSAAARE RRRRISSKTA  180
ELSRLIPGAA RMNSTAEMLQ AAARHVRLLQ AQVGMLALIH SSGEAKAASS MAASREHHQM  240
MMMRALLASG GVQERLAGEG RCLVPTSLVR AIADDDAMAT SNPALSRDVN RFKDSLDQQQ  300
QQ*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QQD4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g31430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g31430
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBX2558750.0BX255875.3 Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL8318080.0AL831808.4 Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664569.12e-46PREDICTED: transcription factor bHLH52-like
TrEMBLQ2QQD40.0Q2QQD4_ORYSJ; Helix-loop-helix DNA-binding domain containing protein
STRINGLOC_Os12g31430.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP59691219
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.17e-21bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]