PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g24400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 707aa    MW: 81627.1 Da    PI: 5.0998
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g24400.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.91.9e-14289339148
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...t 48 
                       +fYn YA++vGFs++k+++++s++++ +t++tf+C+++ k+++ k+k   +
  LOC_Os12g24400.1 289 DFYNGYAYMVGFSTCKASNYHSRKTDVVTRHTFKCNRWRKPSDPKEKdlpE 339
                       6****************************************9998885552 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-12289341IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.916544580IPR007527Zinc finger, SWIM-type
PfamPF044348.9E-5551580IPR007527Zinc finger, SWIM-type
SMARTSM005759.1E-6555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MGALSSCKCH YIVQKKGCNA IFFIYPNVQG TEAESNEDYG MLFRLSQEGG ITYTNLIQQV  60
SVSPNAILPS AEVAGGLPLL QNTYGSFMQL LQAPIESESA LYLTSNRFEY DNTFWGFDPH  120
NGYQQNDLQN AQTDTSQMCN SLPQSVAVHP PMASLDMLYD EMQKSSADVD NQAEMCRPTV  180
QLKASSVEVI YNEMQTQTIE ADACFDQHFE QATEEDLLSD HAIVTFQQVE EIEQDKSAEN  240
PDQNFSEEDI NIFLENESVA VVQRGGQDAK SAHVPSINKV FADENEAFDF YNGYAYMVGF  300
STCKASNYHS RKTDVVTRHT FKCNRWRKPS DPKEKDLPEV DEVENCLQTN TTNPLCLDFF  360
EKKRSEDPLF YFRFRTDENN VVKSLFWSDG NSRKFYEMFG DIVSFDMTYK TNRYFQLMWV  420
TRKRWAPVYF KSNWCPLIQT TARSEGTNSS VSAFLAQYER IAETIYECFK EQESLTRNTV  480
LDTWSEYQFE KQATKLYTRK IFWAFQRILQ SYTKYDVTVK VRDSIFEVYK SEIHELQDFR  540
KRKYIVVVDT ISEEYECICS RFKKDGILCV HVLKVLIHLN ITKLPEKYFI ERWRLKDKNQ  600
ELSVPNTLMS ATVLECNPLL RFNILSQKMI KLASDASKTK QKFIYVMNES DKIEDGLKAM  660
SDTAPNEATV HVQDAAAMSR PKNLKYINCC LIGIFRNYFK SLQAKP*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QSE4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g24400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g24400
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL9287470.0AL928747.3 Oryza sativa chromosome 12, . BAC OSJNBa0017A21 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642362.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBLQ2QSE40.0Q2QSE4_ORYSJ; Transposon protein, putative, unclassified
STRINGLOC_Os12g24400.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP2200135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-16FAR1-related sequence 5
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]