PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g22630.1
Common NameLOC107275475, Os12g0415000, OSNPB_120415000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 471aa    MW: 50829.5 Da    PI: 5.0387
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g22630.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.87.5e-22101332128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         GfrF+P+ ee+v++yL + ++g++ + +e  i+++++y +eP++L +     +++++ + +f ++ ++ +    + +r++  g W ++ + 
  LOC_Os12g22630.1  10 ELGFRFNPSPEEVVTYYLPRLIAGHPPKDTEScIHRANVYGAEPRELAAqfapVARSSNGDRFFLTECKRIK---GKVSRVAGGGSWVSQTS- 98 
                       57***********************95554444**************8435543333333556666665543...5899999*****98765. PP

               NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k++++++g +vg  k + f     ++g++tdW+m+ey+l
  LOC_Os12g22630.1  99 KDIKNREGIKVGEAKNFRFK----KDGTNTDWLMEEYHL 133
                       999999*************7....78999********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-227151IPR003441NAC domain
PROSITE profilePS5100525.1789151IPR003441NAC domain
PfamPF023651.7E-1312133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MATNLHLLLE LGFRFNPSPE EVVTYYLPRL IAGHPPKDTE SCIHRANVYG AEPRELAAQF  60
APVARSSNGD RFFLTECKRI KGKVSRVAGG GSWVSQTSKD IKNREGIKVG EAKNFRFKKD  120
GTNTDWLMEE YHLCLRQASD LEPVLCRVYV SPRAAKDSAA HQESAALTPQ EPAPPLAHAP  180
APAPIQEPAA LPRQELAPAP PRLEAVITQQ QATMKMGGSV PASKATRQSC VTASAPPPRR  240
VAPQPAPPSL RTAPAAVAPP RQVPVITQQQ APPLKRPAPP VPSPPCAKKI RGPVSASPAA  300
RQSCVAASAP PPWCVPPPPR PAPPSRRVMA PLPPYPMDPF ETPPSPHAPR HDPFEPPPSP  360
DPPIQSYAID PPIQSYAMDP FEQPPSPYAP HGVDDMDEFT RSLEAQLEEA DGDEIAAATV  420
APPMAQNVAP DDDMDEFTRS LEAQLEEADG DDKIDDDEID EEIFQIPLKD *
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QSX2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g22630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g22630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL8448790.0AL844879.5 Oryza sativa chromosome 12, . BAC OSJNBa0036H15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619209.10.0PREDICTED: proteoglycan 4-like
TrEMBLA0A0E0RGF40.0A0A0E0RGF4_ORYRU; Uncharacterized protein
TrEMBLQ2QSX20.0Q2QSX2_ORYSJ; No apical meristem protein
STRINGLOC_Os12g22630.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9262314
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04400.12e-13NAC domain containing protein 77
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]