PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g18910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 534aa    MW: 61290.1 Da    PI: 8.1932
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g18910.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.31.9e-11110179278
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwev 78 
                       fYn+Y +++GF+vrks+s+          r+ +Cskegk++ + ++ +k++r+r + r+gC+a ++v++   +g+  +
  LOC_Os12g18910.1 110 FYNKYVEHAGFNVRKSRSRAA-------YREICCSKEGKNKYRGDE-TKRERRRGSARIGCRAYVRVRNVViEGEVAL 179
                       9***************98877.......7899************99.9999999*************98776665555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-7110176IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.174389425IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MASGGEDPGP SDVRSHVPAL VADRSHLMQG NDVRLHDDVQ RGGLQQLGGG DGGGDTGSES  60
TRTDRPPCVD DAHMRMPTRN VMHIHGAHVP DEMVPKFGME FKSYEMAYAF YNKYVEHAGF  120
NVRKSRSRAA YREICCSKEG KNKYRGDETK RERRRGSARI GCRAYVRVRN VVIEGEVALT  180
ITYNQHCLDV PCFEMKGLNH LSGYLRRSRI AWETALHHVA FLQTYTPIEF EYAWKEFIDK  240
FGLHDSTELR DLYDIRHRWV PAFFKEDYCG HMTSTQRSES FNRLVKSSFV DHQTALHRFA  300
RRILEVVLSR KEKEAAETRA CQDVPNVKTA WPFAEQLSRV YTRAVFKVFE NTLDESVHFR  360
IEQYGVDQTQ WIISHSKRSE KHDWCQRQFK VTADVVNGQF ICECMQWEHT GLFCPHLLRA  420
FVHVQVEKIP HTYVLRRYSR EAKSDVNFDR RDRPIAGLDG VKLSNRTKVL SLDAQQLVKW  480
GRRSSVAFER ATSVMKGLRN QLEEIPADVH GLDADDGVSE HEVEVGDGAR PSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.788251e-127panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154680751e-127
Expression AtlasQ2QTQ0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g18910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g18910
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL8448750.0AL844875.4 Oryza sativa chromosome 12, . BAC OSJNBb0032I14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642312.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLQ2QTQ00.0Q2QTQ0_ORYSJ; Transposon protein, putative, unclassified
STRINGLOC_Os12g18910.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP649725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-25FAR1-related sequence 5
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]