PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g18150.1
Common NameLOC4351981, Os12g0279100, OSNPB_120279100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 1367aa    MW: 151845 Da    PI: 7.4501
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g18150.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003512471270122
                        EEET..TTTEEESSHHHHHHHHHH CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                        ++C    C++sFs++ +L  H r 
  LOC_Os12g18150.1 1247 FPCDieGCDMSFSTQQDLLLHKRD 1270
                        789999***************985 PP

2zf-C2H211.90.0007113301356123
                        EEET..TTTEEESSHHHHHHHHHH..T CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                        y+C+   Cg++F+  s++ rH r+  H
  LOC_Os12g18150.1 1330 YECQepGCGQTFRFVSDFSRHKRKtgH 1356
                        899999****************99666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.9E-161960IPR003349JmjN domain
PROSITE profilePS5118314.2012061IPR003349JmjN domain
PfamPF023753.4E-142154IPR003349JmjN domain
SMARTSM005585.2E-43183352IPR003347JmjC domain
PROSITE profilePS5118432.998183352IPR003347JmjC domain
SuperFamilySSF511979.89E-23200349No hitNo description
PfamPF023731.6E-34216335IPR003347JmjC domain
SMARTSM003559.712471269IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.90712701299IPR007087Zinc finger, C2H2
SMARTSM003551512701294IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012721294IPR007087Zinc finger, C2H2
SuperFamilySSF576672.12E-1412811335No hitNo description
Gene3DG3DSA:3.30.160.605.3E-1112971324IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.6E-413001324IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.65513001329IPR007087Zinc finger, C2H2
PROSITE patternPS00028013021324IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.2E-1013251353IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.92613301361IPR007087Zinc finger, C2H2
SMARTSM003550.1813301356IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013321356IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 1367 aa     Download sequence    Send to blast
MSLQPPAVEP PEWLRTLPVA PEYHPTLAEF ADPIAYILRI EPEASRYGIC KIVPPLPRPP  60
EDDTFRRLQA AFAAAASSNG DPSPTFPTRL QQVGLSARNR RAASRRVWES GERYTLEAFR  120
AKAAEFEPPR HAAPPRNPTH LQLEALFWAA CASRPFSVEY GNDMPGSGFA SPDELPDAAN  180
ATDVGETEWN MRVAPRARGS LLRAMARDVA GVTTPMLYVA MLYSWFAWHV EDHELHSLNF  240
LHFGKAKTWY GVPRDAMLAF EETVRVHGYA DDLNAIMAFQ TLNEKTTVLS PEVLLSAGVP  300
CCRLVQKAGE FVITFPGAYH SGFSHGFNCG EASNIATPHW LQVAKEAAIR RASTNCGPMV  360
SHYQLLYELA LSLRPREPKN FYSVPRSSRL RDKNKNEGDI MVKENFVGSV TENNNLLSAL  420
LDKNSCIIVP NADFFVPSFP VALESEVTVK QRFTAGPCSI SQQGAENMAA DHVAVDKVTE  480
IQDMSGSLYP CETSLVGCSN RKLYETKYGQ RDAAALCLST SEIQSRGIDT ARSHPAGGIL  540
DQGRLPCVQC GILSFACVAI IQPREAAVQF IMSKECISSS AKQGGIGASD DTSNWIDQSH  600
EISPPPGPAS GTDDNVKHAV SLAHVSDRCR ELYASNTDGC TSALGLLASA YDSSDSDDET  660
TEDVSKHSKK NDSVNQSTDP QILETSASCS STVQCQKTNS HLHEEECEAR ATSLMKPVSH  720
NSRPISQSNR DTDIDHFIEL GKSGTQCSGY LDLVDDLTTS VLKSSSDTCV SAAKASMDPD  780
VLTMLRYNKD SCRMHVFCLE HALETWTQLQ QIGGANIMLL CHPEYPRAES AAKVIAEELG  840
IKHDWKDITF KEATEEDVKK IQLALQDEDA EPTGSDWAVK MGINIYYSAK QSKSPLYSKQ  900
IPYNSIIYKA FGQENPDSLT DYGCQKSGST KKKVAGWWCG KVWMSNQVHP LLAREREEQN  960
SSVVYGKAMF TTISHGKVQD EASTRCNTSN RTPSRRTSRR KKGVSAEKSK PKNKRSTASD  1020
EASMLCSGLG MNSGVIHDQT ENSDDYDKHG NGDEIEEGTN PQKYQQRKLQ NVTRKSSSKK  1080
RKDEKRTDSF HELYDEDNGV DYWLNMGSGD DATLGNSRQQ SPDPVKVKSG GKLQGKRKSS  1140
KYKSNDDLLN EENKLQKMNK KSSSKKQKND KINRQLQEDQ TEDDHMDHLV DVAVADEVTL  1200
DNEDKITEDK IDDVKVKSRG KSQNGKRKGS KHQATDGLRA GNKVAKFPCD IEGCDMSFST  1260
QQDLLLHKRD ICPVKGCKKK FFCHKYLLQH RKVHIDERPL KCTWKGCKKA FKWPWARTEH  1320
MRVHTGVRPY ECQEPGCGQT FRFVSDFSRH KRKTGHSSDK RRKNST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fwj_B1e-51183707351HISTONE DEMETHYLASE JARID1C
5fwj_A1e-51183707351HISTONE DEMETHYLASE JARID1C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.487060.0panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154881690.0
Expression AtlasQ2QTX9-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g18150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g18150
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0652510.0AK065251.1 Oryza sativa Japonica Group cDNA clone:J013002J08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620626.10.0PREDICTED: lysine-specific demethylase REF6
TrEMBLA0A0E0RFZ50.0A0A0E0RFZ5_ORYRU; Uncharacterized protein
TrEMBLQ2QTX90.0Q2QTX9_ORYSJ; JmjC domain containing protein, expressed
STRINGLOC_Os12g18150.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP44011217
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-159relative of early flowering 6
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]