PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g12380.3
Common NameLOC4351811, Os12g0225300, OSNPB_120225300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 715aa    MW: 80926 Da    PI: 5.4989
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g12380.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1773.6e-2497187289
              FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       fYneYA+ +GF  r+ +s++s  +++ +++++fvCs+eg +++++ +   + +++r+ra+ r gC+a+++v ++ +++w+v+kle+ HnH+l
  LOC_Os12g12380.3  97 FYNEYARWLGFPFRVGRSRRSkGMEEVVIMKRFVCSREGAHKKKQPStsgEATSKRERASMREGCNAMMEVVRD-KDHWVVSKLEKAHNHSL 187
                       9*******************944567789***********9999888787888999***************999.9**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-2197187IPR004330FAR1 DNA binding domain
PfamPF105516.1E-28280371IPR018289MULE transposase domain
PROSITE profilePS5096610.979560596IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-8563593IPR007527Zinc finger, SWIM-type
SMARTSM005750.0012571598IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MEDDERGDGD ELIADYVDCL MSLDTNSRSC QNDALILEGA PDDVDDDAAA AAAAAAEQDV  60
MRDFAPGDGD GDADAENDPK EPVLGMTFES DEAAKMFYNE YARWLGFPFR VGRSRRSKGM  120
EEVVIMKRFV CSREGAHKKK QPSTSGEATS KRERASMREG CNAMMEVVRD KDHWVVSKLE  180
KAHNHSLGIG TRYGYLRARG LPDVSNKIAA MGSDGTASLR QNFLGETGDG QGLLDYLKKK  240
QANDPRCSHA IQVDKNGCLM NVFWADSRAK EAYRHFGDAV TFDTSYKKTK YMMPFVTFSG  300
VNHHLQTVIF GCAFLMEETE SSFSWLFETW LAAMGGKAPG SLVTDQNRAM KAAIGKVFPD  360
TCHRFCKWYI LSRTKQKLCH AYSEHPDLRD EIESCVIESE TISTFETSWM SILEKYDLRK  420
HAWLQAIYNI RQKWVPLYMM GTFFAEISPT QKLETMNDFY KKYFNTKTTL EVFLNQFDST  480
MTSRYENEAQ ADIDTRLNEA TTRTASPIEK QAASTYTKAV FSRFQEEFTE SLGYIIQKTE  540
EGRVNKFSIT KDEDDPSDTF CVTYNASSKM AKCSCKYFKF SGILCRHILG VFIIVDPRTL  600
PPDYFLKRWT RNARHDELLE DNSNNHKDAT CQSITSRYNV LCADAIRCAD KGSASKAVYK  660
AAKDILQKAY EEIIAYERNP GRGLQRDAIN INEDITIDDT MNDQSLPDFW TKGT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.505620.0callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379914760.0
Expression AtlasQ0IPB9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g12380.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g12380
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0656550.0AK065655.1 Oryza sativa Japonica Group cDNA clone:J013037J06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620344.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBLQ0IPB90.0Q0IPB9_ORYSJ; Os12g0225300 protein
STRINGLOC_Os12g12380.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-146FAR1-related sequence 5
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]