PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g10520.2
Common NameOsJ_35555
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23104.8 Da    PI: 9.8493
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g10520.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.27e-261058250
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      rien   rqvtf+kRr g+lKKA ELSvLCda+v viifss+gkl+e +
  LOC_Os12g10520.2 10 RIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELA 58
                      8*********************************************965 PP

2K-box52.42.3e-188817216100
             K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                         +q +  L++ei+ Lqr +R   G + ++++l  L+ Le+ Le  + +iR++K++++ ++i+ l++ke  l+e+n++L++k++e
  LOC_Os12g10520.2  88 VAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEMLQEKVKE 172
                       55677778**************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.464161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-28174IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.44E-38373No hitNo description
PRINTSPR004047.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003196.3E-241056IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.45986176IPR002487Transcription factor, K-box
PfamPF014861.3E-1887170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVRGKVQMRR IENPVHRQVT FCKRRGGLLK KARELSVLCD ADVGVIIFSS QGKLHELATN  60
GNMHNLVERY QSNVAGGQME PGALQRQVAE QGIFLLREEI DLLQRGLRST YGGGAGEMTL  120
DKLHALEKGL ELWIYQIRTT KMQMMQQEIQ FLRNKEGILK EANEMLQEKV KEQQKLYMSL  180
LDLHSQQPTQ PMTYGNRFFS I*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA3CFV1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g10520.2
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g10520
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1777000.0AY177700.1 Oryza sativa (japonica cultivar-group) transcription factor MADS33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618440.11e-145PREDICTED: MADS-box transcription factor 33
SwissprotQ2QW551e-147MAD33_ORYSJ; MADS-box transcription factor 33
TrEMBLA0A0E0BQC51e-147A0A0E0BQC5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0J7X21e-147A0A0E0J7X2_ORYNI; Uncharacterized protein
TrEMBLA2ZIY81e-147A2ZIY8_ORYSI; Putative uncharacterized protein
TrEMBLA3CFV11e-147A3CFV1_ORYSJ; Uncharacterized protein
STRINGBGIOSGA036463-PA1e-147(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-60AGAMOUS-like 12